PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000975.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 532aa    MW: 56863.6 Da    PI: 9.3364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000975.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0599121123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Itr_sc000975.1_g00001.1  99 FVCEICNKGFQRDQNLQLHRRGH 121
                              89*******************88 PP

2zf-C2H213.30.00025176198123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  Itr_sc000975.1_g00001.1 176 WKCEKCSKRYAVQSDWKAHSKTC 198
                              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.58E-798121No hitNo description
PfamPF121718.6E-599121IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94999121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355230141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.58E-7171196No hitNo description
SMARTSM00355130176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MMMKGVMIHQ PNLQQSPALD NQENMSNVTS AASGEASVSS SNGGVYPHQQ HFFGGNTINN  60
QPQPQPQQIK KKRNQPGNPD PDSEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLKQR SSKDVVRKKV YVCPESSCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK  180
CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINTGNN  240
NAFHHLNPQP RSSPAPLSNI SLHFQPPPPQ FAAPPSYSIK KEQTNSSAAL AGFNLRPEIP  300
PWLLPCPSGG SPQPPPPAAA VDLTPSIFQE FGGAGLPGFH SAVGSPHISA TALLQKAAQM  360
GATMSGGTGK TGAGGGGPTT LVMSGPHLAH VSSDQPANNN SNADFGLNLS SRGAGGLLLD  420
GLASFGGKTT VSAAPPSASP APSPSFLQDM MNSFSSANNA PFEDPLFGSF LNNNKDAGAG  480
AGDDITKDFL GLRPLSRSDI FNITTGGQLV NSPADHHHHQ GGQSQKTWQQ QA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138KLKQRSSKDVVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235590.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_004235591.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010318499.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR950.0M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-109indeterminate(ID)-domain 7